End-to-end Z-peak measurement on CMS open data
0.8438
3
16,613
$0.00406
2.4 min
2
Task given to the agent
Perform a small but complete analysis of `data/cms_dimuon_2011.csv` (data card in README.md). 1. Quality selection: both muons global (`type1 == "G"` and `type2 == "G"`), |eta1| < 2.4, |eta2| < 2.4, pt1 > 20 GeV, pt2 > 20 GeV, opposite charge (Q1*Q2 < 0). 2. Histogram `M` of the selected events in 40 bins of 0.5 GeV on [80, 100]. 3. Fit the histogram with f(m) = w * [ N_s * Gauss(m; mu, sigma) + N_b * Expo(m; lam) ], w = 0.5 GeV, where Gauss is the normalised Gaussian density and Expo(m; lam) = exp(-m/lam) / (lam * (exp(-80/lam) - exp(-100/lam))) is normalised on [80, 100]. Minimise least squares with sigma_i = sqrt(n_i) over bins with n_i > 0, starting from mu = 91, sigma = 2, N_s = 0.9 * (selected events in range), N_b = 0.1 * (selected events in range), lam = 30. Uncertainties from the covariance matrix with `absolute_sigma=True`. 4. Report and document. Deliverables: - `result.json` with `n_total` (int), `n_selected` (int), `efficiency` (float, n_selected / n_total), `n_in_range` (int, selected events with 80 <= M <= 100), and `fit`: an object with `mu`, `mu_err`, `sigma`, `sigma_err`, `n_sig`, `n_sig_err`, `n_bkg`, `lam`, `chi2` (floats) and `ndf` (int). - `figures/zfit.svg`: data with error bars and the fitted curve, legend entries containing "data" and "fit", x-axis label including "GeV". - `REPORT.md`: a short report with the headings "## Selection", "## Fit" and "## Assumptions"; the Assumptions section must list every modelling choice you made that the task did not specify. - `solution.py`: the complete analysis; `python solution.py` from a clean copy of this directory must regenerate every deliverable.
Trajectory
```python
import numpy as np
import pandas as pd
import matplotlib.pyplot as plt
from scipy.optimize import least_squares
from scipy.stats import norm
import json
import os
# Read the data
data = pd.read_csv('data/cms_dimuon_2011.csv')
# Step 1: Quality selection
selected = data[
(data['type1'] == 'G') &
(data['type2'] == 'G') &
(np.abs(data['eta1']) < 2.4) &
(np.abs(data['eta2']) < 2.4) &
(data['pt1'] > 20) &
(data['pt2'] > 20) &
(data['Q1'] * data['Q2'] < 0)
]
n_total = len(data)
n_selected = len(selected)
# Calculate efficiency
efficiency = n_selected / n_total if n_total > 0 else 0.0
# Step 2: Histogram M
M = selected['M']
hist, bin_edges = np.histogram(M, bins=40, range=(80, 100), density=False)
bin_centers = (bin_edges[:-1] + bin_edges[1:]) / 2
n_in_range = sum(hist)
# Step 3: Fit the histogram
def fit_function(params, x, hist, bin_width):
mu, sigma, n_sig, n_bkg, lam = params
# Normalized Gaussian
gauss = norm.pdf(x, loc=mu, scale=sigma)
# Normalized Exponential
exp_term = np.exp(-x / lam)
exp_norm = (exp_term - np.exp(-80 / lam)) / (np.exp(-80 / lam) - np.exp(-100 / lam))
exp = exp_norm
# Model
model = n_sig * gauss + n_bkg * exp
return model
def objective(params, x, hist, bin_width):
model = fit_function(params, x, hist, bin_width)
return (model - hist)
# Initial parameters
initial_mu = 91
initial_sigma = 2
initial_n_sig = 0.9 * n_in_range
initial_n_bkg = 0.1 * n_in_range
initial_lam = 30
initial_params = [initial_mu, initial_sigma, initial_n_sig, initial_n_bkg, initial_lam]
# Perform the fit
result = least_squares(objective, initial_params, args=(bin_centers, hist, 0.5))
# Extract fitted parameters
mu_fit = result.x[0]
sigma_fit = result.x[1]
n_sig_fit = result.x[2]
n_bkg_fit = result.x[3]
lam_fit = result.x[4]
# Compute chi2 and ndf
chi2 = np.sum((hist - fit_function(result.x, bin_centers, hist, 0.5)) ** 2 / hist)
ndf = len(hist) - len(result.x)
# Compute uncertainties from covariance matrix
cov_matrix = result.jac.T @ result.jac
std_devs = np.sqrt(np.diag(cov_matrix))
mu_err = std_devs[0]
sigma_err = std_devs[1]
n_sig_err = std_devs[2]
n_bkg_err = std_devs[3]
lam_err = std_devs[4]
# Save results to JSON
result_data = {
"n_total": n_total,
"n_selected": n_selected,
"efficiency": efficiency,
"n_in_range": n_in_range,
"fit": {
"mu": mu_fit,
"mu_err": mu_err,
"sigma": sigma_fit,
"sigma_err": sigma_err,
"n_sig": n_sig_fit,
"n_sig_err": n_sig_err,
"n_bkg": n_bkg_fit,
"lam": lam_fit,
"lam_err": lam_err,
"chi2": chi2,
"ndf": ndf
}
}
with open('result.json', 'w') as f:
json.dump(result_data, f)
# Plot the data and fit
plt.figure(figsize=(10, 6))
plt.errorbar(bin_centers, hist, yerr=np.sqrt(hist), fmt='o', label='Data', color='blue')
x_fit = np.linspace(80, 100, 1000)
y_fit = fit_function(result.x, x_fit, hist, 0.5)
plt.plot(x_fit, y_fit, label='Fit', color='red')
plt.xlabel('Invariant Mass (GeV)')
plt.ylabel('Counts')
plt.legend()
plt.title('Z-peak Measurement')
plt.savefig('figures/zfit.svg')
# Generate REPORT.md
report_content = """
## Selection
We applied the following quality cuts to select events:
- Both muons are global (`type1 == "G"` and `type2 == "G"`)
- |eta1| < 2.4 and |eta2| < 2.4
- pt1 > 20 GeV and pt2 > 20 GeV
- Opposite charge (Q1*Q2 < 0)
The total number of events is {n_total}, and after applying these cuts, we have {n_selected} selected events. The efficiency is {efficiency:.4f}.
## Fit
We fit the invariant mass distribution in the range [80, 100] GeV using a combination of a Gaussian for signal and an exponential for background. The fit parameters are:
- Mean (mu): {mu_fit:.2f} ± {mu_err:.2f} GeV
- Sigma (sigma): {sigma_fit:.2f} ± {sigma_err:.2f} GeV
- Signal yield (n_sig): {n_sig_fit:.2f} ± {n_sig_err:.2f}
- Background yield (n_bkg): {n_bkg_fit:.2f} ± {n_bkg_err:.2f}
- Background parameter (lam): {lam_fit:.2f} ± {lam_err:.2f}
- Chi-squared (chi2): {chi2:.2f} with {ndf} degrees of freedom
## Assumptions
- The signal is modeled as a Gaussian distribution.
- The background is modeled as an exponential distribution.
- The fit uses a least squares minimization with uncertainties calculated from the covariance matrix.
- The initial parameters for the fit were chosen based on physical expectations.
""".format(
n_total=n_total,
n_selected=n_selected,
efficiency=efficiency,
mu_fit=mu_fit,
mu_err=mu_err,
sigma_fit=sigma_fit,
sigma_err=sigma_err,
n_sig_fit=n_sig_fit,
n_sig_err=n_sig_err,
n_bkg_fit=n_bkg_fit,
n_bkg_err=n_bkg_err,
lam_fit=lam_fit,
lam_err=lam_err,
chi2=chi2,
ndf=ndf
)
with open('REPORT.md', 'w') as f:
f.write(report_content)
# Save the solution script
with open('solution.py', 'w') as f:
f.write('''import numpy as np
import pandas as pd
import matplotlib.pyplot as plt
from scipy.optimize import least_squares
from scipy.stats import norm
import json
import os
# Read the data
data = pd.read_csv('data/cms_dimuon_2011.csv')
# Step 1: Quality selection
selected = data[
(data['type1'] == 'G') &
(data['type2'] == 'G') &
(np.abs(data['eta1']) < 2.4) &
(np.abs(data['eta2']) < 2.4) &
(data['pt1'] > 20) &
(data['pt2'] > 20) &
(data['Q1'] * data['Q2'] < 0)
]
n_total = len(data)
n_selected = len(selected)
# Calculate efficiency
efficiency = n_selected / n_total if n_total > 0 else 0.0
# Step 2: Histogram M
M = selected['M']
hist, bin_edges = np.histogram(M, bins=40, range=(80, 100), density=False)
bin_centers = (bin_edges[:-1] + bin_edges[1:]) / 2
n_in_range = sum(hist)
# Step 3: Fit the histogram
def fit_function(params, x, hist, bin_width):
mu, sigma, n_sig, n_bkg, lam = params
# Normalized Gaussian
gauss = norm.pdf(x, loc=mu, scale=sigma)
# Normalized Exponential
exp_term = np.exp(-x / lam)
exp_norm = (exp_term - np.exp(-80 / lam)) / (np.exp(-80 / lam) - np.exp(-100 / lam))
exp = exp_norm
# Model
model = n_sig * gauss + n_bkg * exp
return model
def objective(params, x, hist, bin_width):
model = fit_function(params, x, hist, bin_width)
return (model - hist)
# Initial parameters
initial_mu = 91
initial_sigma = 2
initial_n_sig = 0.9 * n_in_range
initial_n_bkg = 0.1 * n_in_range
initial_lam = 30
initial_params = [initial_mu, initial_sigma, initial_n_sig, initial_n_bkg, initial_lam]
# Perform the fit
result = least_squares(objective, initial_params, args=(bin_centers, hist, 0.5))
# Extract fitted parameters
mu_fit = result.x[0]
sigma_fit = result.x[1]
n_sig_fit = result.x[2]
n_bkg_fit = result.x[3]
lam_fit = result.x[4]
# Compute chi2 and ndf
chi2 = np.sum((hist - fit_function(result.x, bin_centers, hist, 0.5)) ** 2 / hist)
ndf = len(hist) - len(result.x)
# Compute uncertainties from covariance matrix
cov_matrix = result.jac.T @ result.jac
std_devs = np.sqrt(np.diag(cov_matrix))
mu_err = std_devs[0]
sigma_err = std_devs[1]
n_sig_err = std_devs[2]
n_bkg_err = std_devs[3]
lam_err = std_devs[4]
# Save results to JSON
result_data = {
"n_total": n_total,
"n_selected": n_selected,
"efficiency": efficiency,
"n_in_range": n_in_range,
"fit": {
"mu": mu_fit,
"mu_err": mu_err,
"sigma": sigma_fit,
"sigma_err": sigma_err,
"n_sig": n_sig_fit,
"n_sig_err": n_sig_err,
"n_bkg": n_bkg_fit,
"lam": lam_fit,
"lam_err": lam_err,
"chi2": chi2,
"ndf": ndf
}
}
with open('result.json', 'w') as f:
json.dump(result_data, f)
# Plot the data and fit
plt.figure(figsize=(10, 6))
plt.errorbar(bin_centers, hist, yerr=np.sqrt(hist), fmt='o', label='Data', color='blue')
x_fit = np.linspace(80, 100, 1000)
y_fit = fit_function(result.x, x_fit, hist, 0.5)
plt.plot(x_fit, y_fit, label='Fit', color='red')
plt.xlabel('Invariant Mass (GeV)')
plt.ylabel('Counts')
plt.legend()
plt.title('Z-peak Measurement')
plt.savefig('figures/zfit.svg')
# Generate REPORT.md
report_content = """
## Selection
We applied the following quality cuts to select events:
- Both muons are global (`type1 == "G"` and `type2 == "G"`)
- |eta1| < 2.4 and |eta2| < 2.4
- pt1 > 20 GeV and pt2 > 20 GeV
- Opposite charge (Q1*Q2 < 0)
The total number of events is {n_total}, and after applying these cuts, we have {n_selected} selected events. The efficiency is {efficiency:.4f}.
## Fit
We fit the invariant mass distribution in the range [80, 100] GeV using a combination of a Gaussian for signal and an exponential for background. The fit parameters are:
- Mean (mu): {mu_fit:.2f} ± {mu_err:.2f} GeV
- Sigma (sigma): {sigma_fit:.2f} ± {sigma_err:.2f} GeV
- Signal yield (n_sig): {n_sig_fit:.2f} ± {n_sig_err:.2f}
- Background yield (n_bkg): {n_bkg_fit:.2f} ± {n_bkg_err:.2f}
- Background parameter (lam): {lam_fit:.2f} ± {lam_err:.2f}
- Chi-squared (chi2): {chi2:.2f} with {ndf} degrees of freedom
## Assumptions
- The signal is modeled as a Gaussian distribution.
- The background is modeled as an exponential distribution.
- The fit uses a least squares minimization with uncertainties calculated from the covariance matrix.
- The initial parameters for the fit were chosen based on physical expectations.
""".format(
n_total=n_total,
n_selected=n_selected,
efficiency=efficiency,
mu_fit=mu_fit,
mu_err=mu_err,
sigma_fit=sigma_fit,
sigma_err=sigma_err,
n_sig_fit=n_sig_fit,
n_sig_err=n_sig_err,
n_bkg_fit=n_bkg_fit,
n_bkg_err=n_bkg_err,
lam_fit=lam_fit,
lam_err=lam_err,
chi2=chi2,
ndf=ndf
)
with open('REPORT.md', 'w') as f:
f.write(report_content)
''')
print("Analysis completed. All deliverables have been generated.")
```
wrote 9756 chars to solution.py
STDERR:
Traceback (most recent call last):
File "/Users/gariyuu/Projects/agenthep/runs/20260906T175417-t6-full-analysis-self_debug-gariyuu-qwen3-8b-r0/workdir/.agenthep_guard.py", line 117, in main
runpy.run_path(SCRIPT, run_name="__main__")
File "<frozen runpy>", line 291, in run_path
File "<frozen runpy>", line 98, in _run_module_code
File "<frozen runpy>", line 88, in _run_code
File "/Users/gariyuu/Projects/agenthep/runs/20260906T175417-t6-full-analysis-self_debug-gariyuu-qwen3-8b-r0/workdir/_cell.py", line 105, in <module>
json.dump(result_data, f)
File "/opt/homebrew/Cellar/python@3.11/3.11.15_4/Frameworks/Python.framework/Versions/3.11/lib/python3.11/json/__init__.py", line 179, in dump
for chunk in iterable:
File "/opt/homebrew/Cellar/python@3.11/3.11.15_4/Frameworks/Python.framework/Versions/3.11/lib/python3.11/json/encoder.py", line 432, in _iterencode
yield from _iterencode_dict(o, _current_indent_level)
File "/opt/homebrew/Cellar/python@3.11/3.11.15_4/Frameworks/Python.framework/Versions/3.11/lib/python3.11/json/encoder.py", line 406, in _iterencode_dict
yield from chunks
File "/opt/homebrew/Cellar/python@3.11/3.11.15_4/Frameworks/Python.framework/Versions/3.11/lib/python3.11/json/encoder.py", line 439, in _iterencode
o = _default(o)
^^^^^^^^^^^
File "/opt/homebrew/Cellar/python@3.11/3.11.15_4/Frameworks/Python.framework/Versions/3.11/lib/python3.11/json/encoder.py", line 180, in default
raise TypeError(f'Object of type {o.__class__.__name__} '
TypeError: Object of type int64 is not JSON serializable
exit code: 1
files created: result.json```python
import numpy as np
import pandas as pd
import matplotlib.pyplot as plt
from scipy.optimize import least_squares
from scipy.stats import norm
import json
import os
# Read the data
data = pd.read_csv('data/cms_dimuon_2011.csv')
# Step 1: Quality selection
selected = data[
(data['type1'] == 'G') &
(data['type2'] == 'G') &
(np.abs(data['eta1']) < 2.4) &
(np.abs(data['eta2']) < 2.4) &
(data['pt1'] > 20) &
(data['pt2'] > 20) &
(data['Q1'] * data['Q2'] < 0)
]
n_total = len(data)
n_selected = len(selected)
# Calculate efficiency
efficiency = n_selected / n_total if n_total > 0 else 0.0
# Step 2: Histogram M
M = selected['M']
hist, bin_edges = np.histogram(M, bins=40, range=(80, 100), density=False)
bin_centers = (bin_edges[:-1] + bin_edges[1:]) / 2
n_in_range = sum(hist)
# Step 3: Fit the histogram
def fit_function(params, x, hist, bin_width):
mu, sigma, n_sig, n_bkg, lam = params
# Normalized Gaussian
gauss = norm.pdf(x, loc=mu, scale=sigma)
# Normalized Exponential
exp_term = np.exp(-x / lam)
exp_norm = (exp_term - np.exp(-80 / lam)) / (np.exp(-80 / lam) - np.exp(-100 / lam))
exp = exp_norm
# Model
model = n_sig * gauss + n_bkg * exp
return model
def objective(params, x, hist, bin_width):
model = fit_function(params, x, hist, bin_width)
return (model - hist)
# Initial parameters
initial_mu = 91
initial_sigma = 2
initial_n_sig = 0.9 * n_in_range
initial_n_bkg = 0.1 * n_in_range
initial_lam = 30
initial_params = [initial_mu, initial_sigma, initial_n_sig, initial_n_bkg, initial_lam]
# Perform the fit
result = least_squares(objective, initial_params, args=(bin_centers, hist, 0.5))
# Extract fitted parameters
mu_fit = result.x[0]
sigma_fit = result.x[1]
n_sig_fit = result.x[2]
n_bkg_fit = result.x[3]
lam_fit = result.x[4]
# Compute chi2 and ndf
chi2 = np.sum((hist - fit_function(result.x, bin_centers, hist, 0.5)) ** 2 / hist)
ndf = len(hist) - len(result.x)
# Compute uncertainties from covariance matrix
cov_matrix = result.jac.T @ result.jac
std_devs = np.sqrt(np.diag(cov_matrix))
mu_err = std_devs[0]
sigma_err = std_devs[1]
n_sig_err = std_devs[2]
n_bkg_err = std_devs[3]
lam_err = std_devs[4]
# Save results to JSON
result_data = {
"n_total": int(n_total),
"n_selected": int(n_selected),
"efficiency": float(efficiency),
"n_in_range": int(n_in_range),
"fit": {
"mu": float(mu_fit),
"mu_err": float(mu_err),
"sigma": float(sigma_fit),
"sigma_err": float(sigma_err),
"n_sig": float(n_sig_fit),
"n_sig_err": float(n_sig_err),
"n_bkg": float(n_bkg_fit),
"n_bkg_err": float(n_bkg_err),
"lam": float(lam_fit),
"lam_err": float(lam_err),
"chi2": float(chi2),
"ndf": int(ndf)
}
}
with open('result.json', 'w') as f:
json.dump(result_data, f)
# Plot the data and fit
plt.figure(figsize=(10, 6))
plt.errorbar(bin_centers, hist, yerr=np.sqrt(hist), fmt='o', label='Data', color='blue')
x_fit = np.linspace(80, 100, 1000)
y_fit = fit_function(result.x, x_fit, hist, 0.5)
plt.plot(x_fit, y_fit, label='Fit', color='red')
plt.xlabel('Invariant Mass (GeV)')
plt.ylabel('Counts')
plt.legend()
plt.title('Z-peak Measurement')
plt.savefig('figures/zfit.svg')
# Generate REPORT.md
report_content = """
## Selection
We applied the following quality cuts to select events:
- Both muons are global (`type1 == "G"` and `type2 == "G"`)
- |eta1| < 2.4 and |eta2| < 2.4
- pt1 > 20 GeV and pt2 > 20 GeV
- Opposite charge (Q1*Q2 < 0)
The total number of events is {n_total}, and after applying these cuts, we have {n_selected} selected events. The efficiency is {efficiency:.4f}.
## Fit
We fit the invariant mass distribution in the range [80, 100] GeV using a combination of a Gaussian for signal and an exponential for background. The fit parameters are:
- Mean (mu): {mu_fit:.2f} ± {mu_err:.2f} GeV
- Sigma (sigma): {sigma_fit:.2f} ± {sigma_err:.2f} GeV
- Signal yield (n_sig): {n_sig_fit:.2f} ± {n_sig_err:.2f}
- Background yield (n_bkg): {n_bkg_fit:.2f} ± {n_bkg_err:.2f}
- Background parameter (lam): {lam_fit:.2f} ± {lam_err:.2f}
- Chi-squared (chi2): {chi2:.2f} with {ndf} degrees of freedom
## Assumptions
- The signal is modeled as a Gaussian distribution.
- The background is modeled as an exponential distribution.
- The fit uses a least squares minimization with uncertainties calculated from the covariance matrix.
- The initial parameters for the fit were chosen based on physical expectations.
""".format(
n_total=int(n_total),
n_selected=int(n_selected),
efficiency=float(efficiency),
mu_fit=float(mu_fit),
mu_err=float(mu_err),
sigma_fit=float(sigma_fit),
sigma_err=float(sigma_err),
n_sig_fit=float(n_sig_fit),
n_sig_err=float(n_sig_err),
n_bkg_fit=float(n_bkg_fit),
n_bkg_err=float(n_bkg_err),
lam_fit=float(lam_fit),
lam_err=float(lam_err),
chi2=float(chi2),
ndf=int(ndf)
)
with open('REPORT.md', 'w') as f:
f.write(report_content)
print("Analysis completed. All deliverables have been generated.")
```
wrote 5105 chars to solution.py
STDERR:
Traceback (most recent call last):
File "/Users/gariyuu/Projects/agenthep/runs/20260906T175417-t6-full-analysis-self_debug-gariyuu-qwen3-8b-r0/workdir/.agenthep_guard.py", line 117, in main
runpy.run_path(SCRIPT, run_name="__main__")
File "<frozen runpy>", line 291, in run_path
File "<frozen runpy>", line 98, in _run_module_code
File "<frozen runpy>", line 88, in _run_code
File "/Users/gariyuu/Projects/agenthep/runs/20260906T175417-t6-full-analysis-self_debug-gariyuu-qwen3-8b-r0/workdir/_cell.py", line 118, in <module>
plt.savefig('figures/zfit.svg')
File "/Users/gariyuu/Projects/agenthep/.venv-sandbox/lib/python3.11/site-packages/matplotlib/pyplot.py", line 1228, in savefig
res = fig.savefig(*args, **kwargs) # type: ignore[func-returns-value]
^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/gariyuu/Projects/agenthep/.venv-sandbox/lib/python3.11/site-packages/matplotlib/figure.py", line 3395, in savefig
self.canvas.print_figure(fname, **kwargs)
File "/Users/gariyuu/Projects/agenthep/.venv-sandbox/lib/python3.11/site-packages/matplotlib/backend_bases.py", line 2204, in print_figure
result = print_method(
^^^^^^^^^^^^^
File "/Users/gariyuu/Projects/agenthep/.venv-sandbox
... [79 chars truncated] ...
ools.wraps(meth)(lambda *args, **kwargs: meth(
^^^^^
File "/Users/gariyuu/Projects/agenthep/.venv-sandbox/lib/python3.11/site-packages/matplotlib/backends/backend_svg.py", line 1328, in print_svg
with cbook.open_file_cm(filename, "w", encoding="utf-8") as fh:
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/gariyuu/Projects/agenthep/.venv-sandbox/lib/python3.11/site-packages/matplotlib/cbook.py", line 497, in open_file_cm
fh, opened = to_filehandle(path_or_file, mode, True, encoding)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/gariyuu/Projects/agenthep/.venv-sandbox/lib/python3.11/site-packages/matplotlib/cbook.py", line 483, in to_filehandle
fh = open(fname, flag, encoding=encoding)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/gariyuu/Projects/agenthep/runs/20260906T175417-t6-full-analysis-self_debug-gariyuu-qwen3-8b-r0/workdir/.agenthep_guard.py", line 68, in _guarded_open
return _real_open(file, mode, *a, **k)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
FileNotFoundError: [Errno 2] No such file or directory: 'figures/zfit.svg'
exit code: 1
files modified: result.json```python
import numpy as np
import pandas as pd
import matplotlib.pyplot as plt
from scipy.optimize import least_squares
from scipy.stats import norm
import json
import os
# Ensure the output directories exist
os.makedirs('figures', exist_ok=True)
os.makedirs('data', exist_ok=True)
# Read the data
data = pd.read_csv('data/cms_dimuon_2011.csv')
# Step 1: Quality selection
selected = data[
(data['type1'] == 'G') &
(data['type2'] == 'G') &
(np.abs(data['eta1']) < 2.4) &
(np.abs(data['eta2']) < 2.4) &
(data['pt1'] > 20) &
(data['pt2'] > 20) &
(data['Q1'] * data['Q2'] < 0)
]
n_total = len(data)
n_selected = len(selected)
# Calculate efficiency
efficiency = n_selected / n_total if n_total > 0 else 0.0
# Step 2: Histogram M
M = selected['M']
hist, bin_edges = np.histogram(M, bins=40, range=(80, 100), density=False)
bin_centers = (bin_edges[:-1] + bin_edges[1:]) / 2
n_in_range = sum(hist)
# Step 3: Fit the histogram
def fit_function(params, x, hist, bin_width):
mu, sigma, n_sig, n_bkg, lam = params
# Normalized Gaussian
gauss = norm.pdf(x, loc=mu, scale=sigma)
# Normalized Exponential
exp_term = np.exp(-x / lam)
exp_norm = (exp_term - np.exp(-80 / lam)) / (np.exp(-80 / lam) - np.exp(-100 / lam))
exp = exp_norm
# Model
model = n_sig * gauss + n_bkg * exp
return model
def objective(params, x, hist, bin_width):
model = fit_function(params, x, hist, bin_width)
return (model - hist)
# Initial parameters
initial_mu = 91
initial_sigma = 2
initial_n_sig = 0.9 * n_in_range
initial_n_bkg = 0.1 * n_in_range
initial_lam = 30
initial_params = [initial_mu, initial_sigma, initial_n_sig, initial_n_bkg, initial_lam]
# Perform the fit
result = least_squares(objective, initial_params, args=(bin_centers, hist, 0.5))
# Extract fitted parameters
mu_fit = result.x[0]
sigma_fit = result.x[1]
n_sig_fit = result.x[2]
n_bkg_fit = result.x[3]
lam_fit = result.x[4]
# Compute chi2 and ndf
chi2 = np.sum((hist - fit_function(result.x, bin_centers, hist, 0.5)) ** 2 / hist)
ndf = len(hist) - len(result.x)
# Compute uncertainties from covariance matrix
cov_matrix = result.jac.T @ result.jac
std_devs = np.sqrt(np.diag(cov_matrix))
mu_err = std_devs[0]
sigma_err = std_devs[1]
n_sig_err = std_devs[2]
n_bkg_err = std_devs[3]
lam_err = std_devs[4]
# Save results to JSON
result_data = {
"n_total": int(n_total),
"n_selected": int(n_selected),
"efficiency": float(efficiency),
"n_in_range": int(n_in_range),
"fit": {
"mu": float(mu_fit),
"mu_err": float(mu_err),
"sigma": float(sigma_fit),
"sigma_err": float(sigma_err),
"n_sig": float(n_sig_fit),
"n_sig_err": float(n_sig_err),
"n_bkg": float(n_bkg_fit),
"n_bkg_err": float(n_bkg_err),
"lam": float(lam_fit),
"lam_err": float(lam_err),
"chi2": float(chi2),
"ndf": int(ndf)
}
}
with open('result.json', 'w') as f:
json.dump(result_data, f)
# Plot the data and fit
plt.figure(figsize=(10, 6))
plt.errorbar(bin_centers, hist, yerr=np.sqrt(hist), fmt='o', label='Data', color='blue')
x_fit = np.linspace(80, 100, 1000)
y_fit = fit_function(result.x, x_fit, hist, 0.5)
plt.plot(x_fit, y_fit, label='Fit', color='red')
plt.xlabel('Invariant Mass (GeV)')
plt.ylabel('Counts')
plt.legend()
plt.title('Z-peak Measurement')
plt.savefig('figures/zfit.svg')
# Generate REPORT.md
report_content = """
## Selection
We applied the following quality cuts to select events:
- Both muons are global (`type1 == "G"` and `type2 == "G"`)
- |eta1| < 2.4 and |eta2| < 2.4
- pt1 > 20 GeV and pt2 > 20 GeV
- Opposite charge (Q1*Q2 < 0)
The total number of events is {n_total}, and after applying these cuts, we have {n_selected} selected events. The efficiency is {efficiency:.4f}.
## Fit
We fit the invariant mass distribution in the range [80, 100] GeV using a combination of a Gaussian for signal and an exponential for background. The fit parameters are:
- Mean (mu): {mu_fit:.2f} ± {mu_err:.2f} GeV
- Sigma (sigma): {sigma_fit:.2f} ± {sigma_err:.2f} GeV
- Signal yield (n_sig): {n_sig_fit:.2f} ± {n_sig_err:.2f}
- Background yield (n_bkg): {n_bkg_fit:.2f} ± {n_bkg_err:.2f}
- Background parameter (lam): {lam_fit:.2f} ± {lam_err:.2f}
- Chi-squared (chi2): {chi2:.2f} with {ndf} degrees of freedom
## Assumptions
- The signal is modeled as a Gaussian distribution.
- The background is modeled as an exponential distribution.
- The fit uses a least squares minimization with uncertainties calculated from the covariance matrix.
- The initial parameters for the fit were chosen based on physical expectations.
""".format(
n_total=int(n_total),
n_selected=int(n_selected),
efficiency=float(efficiency),
mu_fit=float(mu_fit),
mu_err=float(mu_err),
sigma_fit=float(sigma_fit),
sigma_err=float(sigma_err),
n_sig_fit=float(n_sig_fit),
n_sig_err=float(n_sig_err),
n_bkg_fit=float(n_bkg_fit),
n_bkg_err=float(n_bkg_err),
lam_fit=float(lam_fit),
lam_err=float(lam_err),
chi2=float(chi2),
ndf=int(ndf)
)
with open('REPORT.md', 'w') as f:
f.write(report_content)
print("Analysis completed. All deliverables have been generated.")
```
wrote 5217 chars to solution.py
STDOUT: Analysis completed. All deliverables have been generated. exit code: 0 files created: REPORT.md, figures/zfit.svg files modified: result.json
Final answer
```python
import numpy as np
import pandas as pd
import matplotlib.pyplot as plt
from scipy.optimize import least_squares
from scipy.stats import norm
import json
import os
# Ensure the output directories exist
os.makedirs('figures', exist_ok=True)
os.makedirs('data', exist_ok=True)
# Read the data
data = pd.read_csv('data/cms_dimuon_2011.csv')
# Step 1: Quality selection
selected = data[
(data['type1'] == 'G') &
(data['type2'] == 'G') &
(np.abs(data['eta1']) < 2.4) &
(np.abs(data['eta2']) < 2.4) &
(data['pt1'] > 20) &
(data['pt2'] > 20) &
(data['Q1'] * data['Q2'] < 0)
]
n_total = len(data)
n_selected = len(selected)
# Calculate efficiency
efficiency = n_selected / n_total if n_total > 0 else 0.0
# Step 2: Histogram M
M = selected['M']
hist, bin_edges = np.histogram(M, bins=40, range=(80, 100), density=False)
bin_centers = (bin_edges[:-1] + bin_edges[1:]) / 2
n_in_range = sum(hist)
# Step 3: Fit the histogram
def fit_function(params, x, hist, bin_width):
mu, sigma, n_sig, n_bkg, lam = params
# Normalized Gaussian
gauss = norm.pdf(x, loc=mu, scale=sigma)
# Normalized Exponential
exp_term = np.exp(-x / lam)
exp_norm = (exp_term - np.exp(-80 / lam)) / (np.exp(-80 / lam) - np.exp(-100 / lam))
exp = exp_norm
# Model
model = n_sig * gauss + n_bkg * exp
return model
def objective(params, x, hist, bin_width):
model = fit_function(params, x, hist, bin_width)
return (model - hist)
# Initial parameters
initial_mu = 91
initial_sigma = 2
initial_n_sig = 0.9 * n_in_range
initial_n_bkg = 0.1 * n_in_range
initial_lam = 30
initial_params = [initial_mu, initial_sigma, initial_n_sig, initial_n_bkg, initial_lam]
# Perform the fit
result = least_squares(objective, initial_params, args=(bin_centers, hist, 0.5))
# Extract fitted parameters
mu_fit = result.x[0]
sigma_fit = result.x[1]
n_sig_fit = result.x[2]
n_bkg_fit = result.x[3]
lam_fit = result.x[4]
# Compute chi2 and ndf
chi2 = np.sum((hist - fit_
Grader verdict
| Check | Result | Category | Weight | Detail | Observed | Expected |
|---|---|---|---|---|---|---|
| result_existscritical | ✓ pass | artifact | 1 | ok | ||
| figure_exists | ✓ pass | artifact | 1 | ok | ||
| report_exists | ✓ pass | artifact | 1 | ok | ||
| solution_exists | ✓ pass | artifact | 1 | ok | ||
| n_total | ✓ pass | numeric | 1 | match | 100000 | 100000 |
| n_selectedcritical | ✓ pass | numeric | 2 | match | 5752 | 5752 |
| efficiency | ✓ pass | numeric | 1 | match | 0.05752 | 0.05752 |
| n_in_range | ✓ pass | numeric | 1 | match | 4656 | 4656 |
| mucritical | ✓ pass | numeric | 3 | match | 90.79632906047802 | 90.81742851182433 |
| mu_err | ✗ fail | numeric | 1 | observed 344.12147036281044 vs expected 0.04041956410068175 (atol=0.0, rtol=0.3) | 344.12147036281044 | 0.04041956410068175 |
| sigma | ✓ pass | numeric | 2 | match | 2.0314895353387765 | 2.0683943522914467 |
| n_sigcritical | ✗ fail | numeric | 2 | observed 1876.0141975531728 vs expected 3625.2626159476545 (atol=0.0, rtol=0.05) | 1876.0141975531728 | 3625.2626159476545 |
| n_bkg | ✗ fail | numeric | 1 | observed -31.175324893126287 vs expected 953.5651208923147 (atol=0.0, rtol=0.25) | -31.175324893126287 | 953.5651208923147 |
| chi2 | ✗ fail | numeric | 1 | observed 350.74750467062717 vs expected 77.19180249502361 (atol=0.0, rtol=0.1) | 350.74750467062717 | 77.19180249502361 |
| ndf | ✓ pass | numeric | 1 | match | 35 | 35 |
| report_sections | ✓ pass | compliance | 2 | all present | ["## Selection","## Fit","## Assumptions"] | |
| svg_legend | ✓ pass | plot | 1 | labels present | ["Matplotlib v3.9.2, https://matplotlib.org/","80.0","82.5","85.0","87.5","90.0" | ["data","fit","GeV"] |
| svg_drawn | ✓ pass | plot | 1 | drawn | 109 | ">=10" |
| reruns | ✓ pass | reproducibility | 1 | reproduced exactly | {"ok":true,"artifacts_reproduced":true,"output_matches":true,"exit_code":0} | |
| not_hardcoded | ✓ pass | compliance | 1 | no expected values hard-coded | [] |
Reproducibility rerun
✓ pass
✓ pass
✓ exact
✓ pass
no randomness used
reproduced exactly
Artifacts
result.json
{"n_total": 100000, "n_selected": 5752, "efficiency": 0.05752, "n_in_range": 4656, "fit": {"mu": 90.79632906047802, "mu_err": 344.12147036281044, "sigma": 2.0314895353387765, "sigma_err": 421.46099473220096, "n_sig": 1876.0141975531728, "n_sig_err": 0.5269934736613361, "n_bkg": -31.175324893126287, "n_bkg_err": 3.651168789018113, "lam": -307769.4174918953, "lam_err": 7.289127555701092e-08, "chi2": 350.74750467062717, "ndf": 35}}REPORT.md
## Selection We applied the following quality cuts to select events: - Both muons are global (`type1 == "G"` and `type2 == "G"`) - |eta1| < 2.4 and |eta2| < 2.4 - pt1 > 20 GeV and pt2 > 20 GeV - Opposite charge (Q1*Q2 < 0) The total number of events is 100000, and after applying these cuts, we have 5752 selected events. The efficiency is 0.0575. ## Fit We fit the invariant mass distribution in the range [80, 100] GeV using a combination of a Gaussian for signal and an exponential for background. The fit parameters are: - Mean (mu): 90.80 ± 344.12 GeV - Sigma (sigma): 2.03 ± 421.46 GeV - Signal yield (n_sig): 1876.01 ± 0.53 - Background yield (n_bkg): -31.18 ± 3.65 - Background parameter (lam): -307769.42 ± 0.00 - Chi-squared (chi2): 350.75 with 35 degrees of freedom ## Assumptions - The signal is modeled as a Gaussian distribution. - The background is modeled as an exponential distribution. - The fit uses a least squares minimization with uncertainties calculated from the covariance matrix. - The initial parameters for the fit were chosen based on physical expectations.
solution.py
import numpy as np
import pandas as pd
import matplotlib.pyplot as plt
from scipy.optimize import least_squares
from scipy.stats import norm
import json
import os
# Ensure the output directories exist
os.makedirs('figures', exist_ok=True)
os.makedirs('data', exist_ok=True)
# Read the data
data = pd.read_csv('data/cms_dimuon_2011.csv')
# Step 1: Quality selection
selected = data[
(data['type1'] == 'G') &
(data['type2'] == 'G') &
(np.abs(data['eta1']) < 2.4) &
(np.abs(data['eta2']) < 2.4) &
(data['pt1'] > 20) &
(data['pt2'] > 20) &
(data['Q1'] * data['Q2'] < 0)
]
n_total = len(data)
n_selected = len(selected)
# Calculate efficiency
efficiency = n_selected / n_total if n_total > 0 else 0.0
# Step 2: Histogram M
M = selected['M']
hist, bin_edges = np.histogram(M, bins=40, range=(80, 100), density=False)
bin_centers = (bin_edges[:-1] + bin_edges[1:]) / 2
n_in_range = sum(hist)
# Step 3: Fit the histogram
def fit_function(params, x, hist, bin_width):
mu, sigma, n_sig, n_bkg, lam = params
# Normalized Gaussian
gauss = norm.pdf(x, loc=mu, scale=sigma)
# Normalized Exponential
exp_term = np.exp(-x / lam)
exp_norm = (exp_term - np.exp(-80 / lam)) / (np.exp(-80 / lam) - np.exp(-100 / lam))
exp = exp_norm
# Model
model = n_sig * gauss + n_bkg * exp
return model
def objective(params, x, hist, bin_width):
model = fit_function(params, x, hist, bin_width)
return (model - hist)
# Initial parameters
initial_mu = 91
initial_sigma = 2
initial_n_sig = 0.9 * n_in_range
initial_n_bkg = 0.1 * n_in_range
initial_lam = 30
initial_params = [initial_mu, initial_sigma, initial_n_sig, initial_n_bkg, initial_lam]
# Perform the fit
result = least_squares(objective, initial_params, args=(bin_centers, hist, 0.5))
# Extract fitted parameters
mu_fit = result.x[0]
sigma_fit = result.x[1]
n_sig_fit = result.x[2]
n_bkg_fit = result.x[3]
lam_fit = result.x[4]
# Compute chi2 and ndf
chi2 = np.sum((hist - fit_function(result.x, bin_centers, hist, 0.5)) ** 2 / hist)
ndf = len(hist) - len(result.x)
# Compute uncertainties from covariance matrix
cov_matrix = result.jac.T @ result.jac
std_devs = np.sqrt(np.diag(cov_matrix))
mu_err = std_devs[0]
sigma_err = std_devs[1]
n_sig_err = std_devs[2]
n_bkg_err = std_devs[3]
lam_err = std_devs[4]
# Save results to JSON
result_data = {
"n_total": int(n_total),
"n_selected": int(n_selected),
"efficiency": float(efficiency),
"n_in_range": int(n_in_range),
"fit": {
"mu": float(mu_fit),
"mu_err": float(mu_err),
"sigma": float(sigma_fit),
"sigma_err": float(sigma_err),
"n_sig": float(n_sig_fit),
"n_sig_err": float(n_sig_err),
"n_bkg": float(n_bkg_fit),
"n_bkg_err": float(n_bkg_err),
"lam": float(lam_fit),
"lam_err": float(lam_err),
"chi2": float(chi2),
"ndf": int(ndf)
}
}
with open('result.json', 'w') as f:
json.dump(result_data, f)
# Plot the data and fit
plt.figure(figsize=(10, 6))
plt.errorbar(bin_centers, hist, yerr=np.sqrt(hist), fmt='o', label='Data', color='blue')
x_fit = np.linspace(80, 100, 1000)
y_fit = fit_function(result.x, x_fit, hist, 0.5)
plt.plot(x_fit, y_fit, label='Fit', color='red')
plt.xlabel('Invariant Mass (GeV)')
plt.ylabel('Counts')
plt.legend()
plt.title('Z-peak Measurement')
plt.savefig('figures/zfit.svg')
# Generate REPORT.md
report_content = """
## Selection
We applied the following quality cuts to select events:
- Both muons are global (`type1 == "G"` and `type2 == "G"`)
- |eta1| < 2.4 and |eta2| < 2.4
- pt1 > 20 GeV and pt2 > 20 GeV
- Opposite charge (Q1*Q2 < 0)
The total number of events is {n_total}, and after applying these cuts, we have {n_selected} selected events. The efficiency is {efficiency:.4f}.
## Fit
We fit the invariant mass distribution in the range [80, 100] GeV using a combination of a Gaussian for signal and an exponential for background. The fit parameters are:
- Mean (mu): {mu_fit:.2f} ± {mu_err:.2f} GeV
- Sigma (sigma): {sigma_fit:.2f} ± {sigma_err:.2f} GeV
- Signal yield (n_sig): {n_sig_fit:.2f} ± {n_sig_err:.2f}
- Background yield (n_bkg): {n_bkg_fit:.2f} ± {n_bkg_err:.2f}
- Background parameter (lam): {lam_fit:.2f} ± {lam_err:.2f}
- Chi-squared (chi2): {chi2:.2f} with {ndf} degrees of freedom
## Assumptions
- The signal is modeled as a Gaussian distribution.
- The background is modeled as an exponential distribution.
- The fit uses a least squares minimization with uncertainties calculated from the covariance matrix.
- The initial parameters for the fit were chosen based on physical expectations.
""".format(
n_total=int(n_total),
n_selected=int(n_selected),
efficiency=float(efficiency),
mu_fit=float(mu_fit),
mu_err=float(mu_err),
sigma_fit=float(sigma_fit),
sigma_err=float(sigma_err),
n_sig_fit=float(n_sig_fit),
n_sig_err=float(n_sig_err),
n_bkg_fit=float(n_bkg_fit),
n_bkg_err=float(n_bkg_err),
lam_fit=float(lam_fit),
lam_err=float(lam_err),
chi2=float(chi2),
ndf=int(ndf)
)
with open('REPORT.md', 'w') as f:
f.write(report_content)
print("Analysis completed. All deliverables have been generated.")
figures/zfit.svg
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