AgentHEPGitHub ↗
2026-09-06 17:54 UTC · seatbelt sandbox · git unknown

End-to-end Z-peak measurement on CMS open data

t6-full-analysistier 6Self-debuggingQwen3-8B (gariyuu gateway)✗ failedtask spec →
Score
0.8438
artifact 1 · numeric 0.6875 · compliance 1 · plot 1 · reproducibility 1
LLM calls
3
6 tool calls
Tokens
16,613
10,342 in · 6,271 out
Cost
$0.00406
Wall
2.4 min
ended: submitted
Errors
2
2 recovered · 0 unsafe

Task given to the agent

Perform a small but complete analysis of `data/cms_dimuon_2011.csv` (data card in README.md).

1. Quality selection: both muons global (`type1 == "G"` and `type2 == "G"`), |eta1| < 2.4, |eta2| < 2.4,
   pt1 > 20 GeV, pt2 > 20 GeV, opposite charge (Q1*Q2 < 0).
2. Histogram `M` of the selected events in 40 bins of 0.5 GeV on [80, 100].
3. Fit the histogram with f(m) = w * [ N_s * Gauss(m; mu, sigma) + N_b * Expo(m; lam) ], w = 0.5 GeV, where Gauss is the
   normalised Gaussian density and Expo(m; lam) = exp(-m/lam) / (lam * (exp(-80/lam) - exp(-100/lam))) is normalised on [80, 100].
   Minimise least squares with sigma_i = sqrt(n_i) over bins with n_i > 0, starting from mu = 91, sigma = 2, N_s = 0.9 * (selected events
   in range), N_b = 0.1 * (selected events in range), lam = 30. Uncertainties from the covariance matrix with `absolute_sigma=True`.
4. Report and document.

Deliverables:
- `result.json` with `n_total` (int), `n_selected` (int), `efficiency` (float, n_selected / n_total), `n_in_range` (int, selected events
  with 80 <= M <= 100), and `fit`: an object with `mu`, `mu_err`, `sigma`, `sigma_err`, `n_sig`, `n_sig_err`, `n_bkg`, `lam`, `chi2` (floats)
  and `ndf` (int).
- `figures/zfit.svg`: data with error bars and the fitted curve, legend entries containing "data" and "fit", x-axis label including "GeV".
- `REPORT.md`: a short report with the headings "## Selection", "## Fit" and "## Assumptions"; the Assumptions section must list
  every modelling choice you made that the task did not specify.
- `solution.py`: the complete analysis; `python solution.py` from a clean copy of this directory must regenerate every deliverable.

Trajectory

observable actions only: assistant text, tool calls, tool results. Hidden reasoning tokens are counted, never shown.
#0 modelgenerate11613084 tok67.389st+67.389s
```python import numpy as np import pandas as pd import matplotlib.pyplot as plt from scipy.optimize import least_squares from scipy.stats import norm import json import os # Read the data data = pd.read_csv('data/cms_dimuon_2011.csv') # Step 1: Quality selection selected = data[ (data['type1'] == 'G') & (data['type2'] == 'G') & (np.abs(data['eta1']) < 2.4) & (np.abs(data['eta2']) < 2.4) & (data['pt1'] > 20) & (data['pt2'] > 20) & (data['Q1'] * data['Q2'] < 0) ] n_total = len(data) n_selected = len(selected) # Calculate efficiency efficiency = n_selected / n_total if n_total > 0 else 0.0 # Step 2: Histogram M M = selected['M'] hist, bin_edges = np.histogram(M, bins=40, range=(80, 100), density=False) bin_centers = (bin_edges[:-1] + bin_edges[1:]) / 2 n_in_range = sum(hist) # Step 3: Fit the histogram def fit_function(params, x, hist, bin_width): mu, sigma, n_sig, n_bkg, lam = params # Normalized Gaussian gauss = norm.pdf(x, loc=mu, scale=sigma) # Normalized Exponential exp_term = np.exp(-x / lam) exp_norm = (exp_term - np.exp(-80 / lam)) / (np.exp(-80 / lam) - np.exp(-100 / lam)) exp = exp_norm # Model model = n_sig * gauss + n_bkg * exp return model def objective(params, x, hist, bin_width): model = fit_function(params, x, hist, bin_width) return (model - hist) # Initial parameters initial_mu = 91 initial_sigma = 2 initial_n_sig = 0.9 * n_in_range initial_n_bkg = 0.1 * n_in_range initial_lam = 30 initial_params = [initial_mu, initial_sigma, initial_n_sig, initial_n_bkg, initial_lam] # Perform the fit result = least_squares(objective, initial_params, args=(bin_centers, hist, 0.5)) # Extract fitted parameters mu_fit = result.x[0] sigma_fit = result.x[1] n_sig_fit = result.x[2] n_bkg_fit = result.x[3] lam_fit = result.x[4] # Compute chi2 and ndf chi2 = np.sum((hist - fit_function(result.x, bin_centers, hist, 0.5)) ** 2 / hist) ndf = len(hist) - len(result.x) # Compute uncertainties from covariance matrix cov_matrix = result.jac.T @ result.jac std_devs = np.sqrt(np.diag(cov_matrix)) mu_err = std_devs[0] sigma_err = std_devs[1] n_sig_err = std_devs[2] n_bkg_err = std_devs[3] lam_err = std_devs[4] # Save results to JSON result_data = { "n_total": n_total, "n_selected": n_selected, "efficiency": efficiency, "n_in_range": n_in_range, "fit": { "mu": mu_fit, "mu_err": mu_err, "sigma": sigma_fit, "sigma_err": sigma_err, "n_sig": n_sig_fit, "n_sig_err": n_sig_err, "n_bkg": n_bkg_fit, "lam": lam_fit, "lam_err": lam_err, "chi2": chi2, "ndf": ndf } } with open('result.json', 'w') as f: json.dump(result_data, f) # Plot the data and fit plt.figure(figsize=(10, 6)) plt.errorbar(bin_centers, hist, yerr=np.sqrt(hist), fmt='o', label='Data', color='blue') x_fit = np.linspace(80, 100, 1000) y_fit = fit_function(result.x, x_fit, hist, 0.5) plt.plot(x_fit, y_fit, label='Fit', color='red') plt.xlabel('Invariant Mass (GeV)') plt.ylabel('Counts') plt.legend() plt.title('Z-peak Measurement') plt.savefig('figures/zfit.svg') # Generate REPORT.md report_content = """ ## Selection We applied the following quality cuts to select events: - Both muons are global (`type1 == "G"` and `type2 == "G"`) - |eta1| < 2.4 and |eta2| < 2.4 - pt1 > 20 GeV and pt2 > 20 GeV - Opposite charge (Q1*Q2 < 0) The total number of events is {n_total}, and after applying these cuts, we have {n_selected} selected events. The efficiency is {efficiency:.4f}. ## Fit We fit the invariant mass distribution in the range [80, 100] GeV using a combination of a Gaussian for signal and an exponential for background. The fit parameters are: - Mean (mu): {mu_fit:.2f} ± {mu_err:.2f} GeV - Sigma (sigma): {sigma_fit:.2f} ± {sigma_err:.2f} GeV - Signal yield (n_sig): {n_sig_fit:.2f} ± {n_sig_err:.2f} - Background yield (n_bkg): {n_bkg_fit:.2f} ± {n_bkg_err:.2f} - Background parameter (lam): {lam_fit:.2f} ± {lam_err:.2f} - Chi-squared (chi2): {chi2:.2f} with {ndf} degrees of freedom ## Assumptions - The signal is modeled as a Gaussian distribution. - The background is modeled as an exponential distribution. - The fit uses a least squares minimization with uncertainties calculated from the covariance matrix. - The initial parameters for the fit were chosen based on physical expectations. """.format( n_total=n_total, n_selected=n_selected, efficiency=efficiency, mu_fit=mu_fit, mu_err=mu_err, sigma_fit=sigma_fit, sigma_err=sigma_err, n_sig_fit=n_sig_fit, n_sig_err=n_sig_err, n_bkg_fit=n_bkg_fit, n_bkg_err=n_bkg_err, lam_fit=lam_fit, lam_err=lam_err, chi2=chi2, ndf=ndf ) with open('REPORT.md', 'w') as f: f.write(report_content) # Save the solution script with open('solution.py', 'w') as f: f.write('''import numpy as np import pandas as pd import matplotlib.pyplot as plt from scipy.optimize import least_squares from scipy.stats import norm import json import os # Read the data data = pd.read_csv('data/cms_dimuon_2011.csv') # Step 1: Quality selection selected = data[ (data['type1'] == 'G') & (data['type2'] == 'G') & (np.abs(data['eta1']) < 2.4) & (np.abs(data['eta2']) < 2.4) & (data['pt1'] > 20) & (data['pt2'] > 20) & (data['Q1'] * data['Q2'] < 0) ] n_total = len(data) n_selected = len(selected) # Calculate efficiency efficiency = n_selected / n_total if n_total > 0 else 0.0 # Step 2: Histogram M M = selected['M'] hist, bin_edges = np.histogram(M, bins=40, range=(80, 100), density=False) bin_centers = (bin_edges[:-1] + bin_edges[1:]) / 2 n_in_range = sum(hist) # Step 3: Fit the histogram def fit_function(params, x, hist, bin_width): mu, sigma, n_sig, n_bkg, lam = params # Normalized Gaussian gauss = norm.pdf(x, loc=mu, scale=sigma) # Normalized Exponential exp_term = np.exp(-x / lam) exp_norm = (exp_term - np.exp(-80 / lam)) / (np.exp(-80 / lam) - np.exp(-100 / lam)) exp = exp_norm # Model model = n_sig * gauss + n_bkg * exp return model def objective(params, x, hist, bin_width): model = fit_function(params, x, hist, bin_width) return (model - hist) # Initial parameters initial_mu = 91 initial_sigma = 2 initial_n_sig = 0.9 * n_in_range initial_n_bkg = 0.1 * n_in_range initial_lam = 30 initial_params = [initial_mu, initial_sigma, initial_n_sig, initial_n_bkg, initial_lam] # Perform the fit result = least_squares(objective, initial_params, args=(bin_centers, hist, 0.5)) # Extract fitted parameters mu_fit = result.x[0] sigma_fit = result.x[1] n_sig_fit = result.x[2] n_bkg_fit = result.x[3] lam_fit = result.x[4] # Compute chi2 and ndf chi2 = np.sum((hist - fit_function(result.x, bin_centers, hist, 0.5)) ** 2 / hist) ndf = len(hist) - len(result.x) # Compute uncertainties from covariance matrix cov_matrix = result.jac.T @ result.jac std_devs = np.sqrt(np.diag(cov_matrix)) mu_err = std_devs[0] sigma_err = std_devs[1] n_sig_err = std_devs[2] n_bkg_err = std_devs[3] lam_err = std_devs[4] # Save results to JSON result_data = { "n_total": n_total, "n_selected": n_selected, "efficiency": efficiency, "n_in_range": n_in_range, "fit": { "mu": mu_fit, "mu_err": mu_err, "sigma": sigma_fit, "sigma_err": sigma_err, "n_sig": n_sig_fit, "n_sig_err": n_sig_err, "n_bkg": n_bkg_fit, "lam": lam_fit, "lam_err": lam_err, "chi2": chi2, "ndf": ndf } } with open('result.json', 'w') as f: json.dump(result_data, f) # Plot the data and fit plt.figure(figsize=(10, 6)) plt.errorbar(bin_centers, hist, yerr=np.sqrt(hist), fmt='o', label='Data', color='blue') x_fit = np.linspace(80, 100, 1000) y_fit = fit_function(result.x, x_fit, hist, 0.5) plt.plot(x_fit, y_fit, label='Fit', color='red') plt.xlabel('Invariant Mass (GeV)') plt.ylabel('Counts') plt.legend() plt.title('Z-peak Measurement') plt.savefig('figures/zfit.svg') # Generate REPORT.md report_content = """ ## Selection We applied the following quality cuts to select events: - Both muons are global (`type1 == "G"` and `type2 == "G"`) - |eta1| < 2.4 and |eta2| < 2.4 - pt1 > 20 GeV and pt2 > 20 GeV - Opposite charge (Q1*Q2 < 0) The total number of events is {n_total}, and after applying these cuts, we have {n_selected} selected events. The efficiency is {efficiency:.4f}. ## Fit We fit the invariant mass distribution in the range [80, 100] GeV using a combination of a Gaussian for signal and an exponential for background. The fit parameters are: - Mean (mu): {mu_fit:.2f} ± {mu_err:.2f} GeV - Sigma (sigma): {sigma_fit:.2f} ± {sigma_err:.2f} GeV - Signal yield (n_sig): {n_sig_fit:.2f} ± {n_sig_err:.2f} - Background yield (n_bkg): {n_bkg_fit:.2f} ± {n_bkg_err:.2f} - Background parameter (lam): {lam_fit:.2f} ± {lam_err:.2f} - Chi-squared (chi2): {chi2:.2f} with {ndf} degrees of freedom ## Assumptions - The signal is modeled as a Gaussian distribution. - The background is modeled as an exponential distribution. - The fit uses a least squares minimization with uncertainties calculated from the covariance matrix. - The initial parameters for the fit were chosen based on physical expectations. """.format( n_total=n_total, n_selected=n_selected, efficiency=efficiency, mu_fit=mu_fit, mu_err=mu_err, sigma_fit=sigma_fit, sigma_err=sigma_err, n_sig_fit=n_sig_fit, n_sig_err=n_sig_err, n_bkg_fit=n_bkg_fit, n_bkg_err=n_bkg_err, lam_fit=lam_fit, lam_err=lam_err, chi2=chi2, ndf=ndf ) with open('REPORT.md', 'w') as f: f.write(report_content) ''') print("Analysis completed. All deliverables have been generated.") ```
#1 toolwrite_fileok0screated: solution.pyt+67.39s
wrote 9756 chars to solution.py
#2 toolrun_pythonTypeError2.312screated: result.jsont+69.702s
STDERR:
Traceback (most recent call last):
  File "/Users/gariyuu/Projects/agenthep/runs/20260906T175417-t6-full-analysis-self_debug-gariyuu-qwen3-8b-r0/workdir/.agenthep_guard.py", line 117, in main
    runpy.run_path(SCRIPT, run_name="__main__")
  File "<frozen runpy>", line 291, in run_path
  File "<frozen runpy>", line 98, in _run_module_code
  File "<frozen runpy>", line 88, in _run_code
  File "/Users/gariyuu/Projects/agenthep/runs/20260906T175417-t6-full-analysis-self_debug-gariyuu-qwen3-8b-r0/workdir/_cell.py", line 105, in <module>
    json.dump(result_data, f)
  File "/opt/homebrew/Cellar/python@3.11/3.11.15_4/Frameworks/Python.framework/Versions/3.11/lib/python3.11/json/__init__.py", line 179, in dump
    for chunk in iterable:
  File "/opt/homebrew/Cellar/python@3.11/3.11.15_4/Frameworks/Python.framework/Versions/3.11/lib/python3.11/json/encoder.py", line 432, in _iterencode
    yield from _iterencode_dict(o, _current_indent_level)
  File "/opt/homebrew/Cellar/python@3.11/3.11.15_4/Frameworks/Python.framework/Versions/3.11/lib/python3.11/json/encoder.py", line 406, in _iterencode_dict
    yield from chunks
  File "/opt/homebrew/Cellar/python@3.11/3.11.15_4/Frameworks/Python.framework/Versions/3.11/lib/python3.11/json/encoder.py", line 439, in _iterencode
    o = _default(o)
        ^^^^^^^^^^^
  File "/opt/homebrew/Cellar/python@3.11/3.11.15_4/Frameworks/Python.framework/Versions/3.11/lib/python3.11/json/encoder.py", line 180, in default
    raise TypeError(f'Object of type {o.__class__.__name__} '
TypeError: Object of type int64 is not JSON serializable

exit code: 1
files created: result.json
#3 modeldebug_148991581 tok37.186st+106.888s
```python import numpy as np import pandas as pd import matplotlib.pyplot as plt from scipy.optimize import least_squares from scipy.stats import norm import json import os # Read the data data = pd.read_csv('data/cms_dimuon_2011.csv') # Step 1: Quality selection selected = data[ (data['type1'] == 'G') & (data['type2'] == 'G') & (np.abs(data['eta1']) < 2.4) & (np.abs(data['eta2']) < 2.4) & (data['pt1'] > 20) & (data['pt2'] > 20) & (data['Q1'] * data['Q2'] < 0) ] n_total = len(data) n_selected = len(selected) # Calculate efficiency efficiency = n_selected / n_total if n_total > 0 else 0.0 # Step 2: Histogram M M = selected['M'] hist, bin_edges = np.histogram(M, bins=40, range=(80, 100), density=False) bin_centers = (bin_edges[:-1] + bin_edges[1:]) / 2 n_in_range = sum(hist) # Step 3: Fit the histogram def fit_function(params, x, hist, bin_width): mu, sigma, n_sig, n_bkg, lam = params # Normalized Gaussian gauss = norm.pdf(x, loc=mu, scale=sigma) # Normalized Exponential exp_term = np.exp(-x / lam) exp_norm = (exp_term - np.exp(-80 / lam)) / (np.exp(-80 / lam) - np.exp(-100 / lam)) exp = exp_norm # Model model = n_sig * gauss + n_bkg * exp return model def objective(params, x, hist, bin_width): model = fit_function(params, x, hist, bin_width) return (model - hist) # Initial parameters initial_mu = 91 initial_sigma = 2 initial_n_sig = 0.9 * n_in_range initial_n_bkg = 0.1 * n_in_range initial_lam = 30 initial_params = [initial_mu, initial_sigma, initial_n_sig, initial_n_bkg, initial_lam] # Perform the fit result = least_squares(objective, initial_params, args=(bin_centers, hist, 0.5)) # Extract fitted parameters mu_fit = result.x[0] sigma_fit = result.x[1] n_sig_fit = result.x[2] n_bkg_fit = result.x[3] lam_fit = result.x[4] # Compute chi2 and ndf chi2 = np.sum((hist - fit_function(result.x, bin_centers, hist, 0.5)) ** 2 / hist) ndf = len(hist) - len(result.x) # Compute uncertainties from covariance matrix cov_matrix = result.jac.T @ result.jac std_devs = np.sqrt(np.diag(cov_matrix)) mu_err = std_devs[0] sigma_err = std_devs[1] n_sig_err = std_devs[2] n_bkg_err = std_devs[3] lam_err = std_devs[4] # Save results to JSON result_data = { "n_total": int(n_total), "n_selected": int(n_selected), "efficiency": float(efficiency), "n_in_range": int(n_in_range), "fit": { "mu": float(mu_fit), "mu_err": float(mu_err), "sigma": float(sigma_fit), "sigma_err": float(sigma_err), "n_sig": float(n_sig_fit), "n_sig_err": float(n_sig_err), "n_bkg": float(n_bkg_fit), "n_bkg_err": float(n_bkg_err), "lam": float(lam_fit), "lam_err": float(lam_err), "chi2": float(chi2), "ndf": int(ndf) } } with open('result.json', 'w') as f: json.dump(result_data, f) # Plot the data and fit plt.figure(figsize=(10, 6)) plt.errorbar(bin_centers, hist, yerr=np.sqrt(hist), fmt='o', label='Data', color='blue') x_fit = np.linspace(80, 100, 1000) y_fit = fit_function(result.x, x_fit, hist, 0.5) plt.plot(x_fit, y_fit, label='Fit', color='red') plt.xlabel('Invariant Mass (GeV)') plt.ylabel('Counts') plt.legend() plt.title('Z-peak Measurement') plt.savefig('figures/zfit.svg') # Generate REPORT.md report_content = """ ## Selection We applied the following quality cuts to select events: - Both muons are global (`type1 == "G"` and `type2 == "G"`) - |eta1| < 2.4 and |eta2| < 2.4 - pt1 > 20 GeV and pt2 > 20 GeV - Opposite charge (Q1*Q2 < 0) The total number of events is {n_total}, and after applying these cuts, we have {n_selected} selected events. The efficiency is {efficiency:.4f}. ## Fit We fit the invariant mass distribution in the range [80, 100] GeV using a combination of a Gaussian for signal and an exponential for background. The fit parameters are: - Mean (mu): {mu_fit:.2f} ± {mu_err:.2f} GeV - Sigma (sigma): {sigma_fit:.2f} ± {sigma_err:.2f} GeV - Signal yield (n_sig): {n_sig_fit:.2f} ± {n_sig_err:.2f} - Background yield (n_bkg): {n_bkg_fit:.2f} ± {n_bkg_err:.2f} - Background parameter (lam): {lam_fit:.2f} ± {lam_err:.2f} - Chi-squared (chi2): {chi2:.2f} with {ndf} degrees of freedom ## Assumptions - The signal is modeled as a Gaussian distribution. - The background is modeled as an exponential distribution. - The fit uses a least squares minimization with uncertainties calculated from the covariance matrix. - The initial parameters for the fit were chosen based on physical expectations. """.format( n_total=int(n_total), n_selected=int(n_selected), efficiency=float(efficiency), mu_fit=float(mu_fit), mu_err=float(mu_err), sigma_fit=float(sigma_fit), sigma_err=float(sigma_err), n_sig_fit=float(n_sig_fit), n_sig_err=float(n_sig_err), n_bkg_fit=float(n_bkg_fit), n_bkg_err=float(n_bkg_err), lam_fit=float(lam_fit), lam_err=float(lam_err), chi2=float(chi2), ndf=int(ndf) ) with open('REPORT.md', 'w') as f: f.write(report_content) print("Analysis completed. All deliverables have been generated.") ```
#4 toolwrite_fileok0screated: solution.pyt+106.888s
wrote 5105 chars to solution.py
#5 toolrun_pythonFileNotFoundError1.575st+108.463s
STDERR:
Traceback (most recent call last):
  File "/Users/gariyuu/Projects/agenthep/runs/20260906T175417-t6-full-analysis-self_debug-gariyuu-qwen3-8b-r0/workdir/.agenthep_guard.py", line 117, in main
    runpy.run_path(SCRIPT, run_name="__main__")
  File "<frozen runpy>", line 291, in run_path
  File "<frozen runpy>", line 98, in _run_module_code
  File "<frozen runpy>", line 88, in _run_code
  File "/Users/gariyuu/Projects/agenthep/runs/20260906T175417-t6-full-analysis-self_debug-gariyuu-qwen3-8b-r0/workdir/_cell.py", line 118, in <module>
    plt.savefig('figures/zfit.svg')
  File "/Users/gariyuu/Projects/agenthep/.venv-sandbox/lib/python3.11/site-packages/matplotlib/pyplot.py", line 1228, in savefig
    res = fig.savefig(*args, **kwargs)  # type: ignore[func-returns-value]
          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/gariyuu/Projects/agenthep/.venv-sandbox/lib/python3.11/site-packages/matplotlib/figure.py", line 3395, in savefig
    self.canvas.print_figure(fname, **kwargs)
  File "/Users/gariyuu/Projects/agenthep/.venv-sandbox/lib/python3.11/site-packages/matplotlib/backend_bases.py", line 2204, in print_figure
    result = print_method(
             ^^^^^^^^^^^^^
  File "/Users/gariyuu/Projects/agenthep/.venv-sandbox
... [79 chars truncated] ...
ools.wraps(meth)(lambda *args, **kwargs: meth(
                                                                 ^^^^^
  File "/Users/gariyuu/Projects/agenthep/.venv-sandbox/lib/python3.11/site-packages/matplotlib/backends/backend_svg.py", line 1328, in print_svg
    with cbook.open_file_cm(filename, "w", encoding="utf-8") as fh:
         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/gariyuu/Projects/agenthep/.venv-sandbox/lib/python3.11/site-packages/matplotlib/cbook.py", line 497, in open_file_cm
    fh, opened = to_filehandle(path_or_file, mode, True, encoding)
                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/gariyuu/Projects/agenthep/.venv-sandbox/lib/python3.11/site-packages/matplotlib/cbook.py", line 483, in to_filehandle
    fh = open(fname, flag, encoding=encoding)
         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/gariyuu/Projects/agenthep/runs/20260906T175417-t6-full-analysis-self_debug-gariyuu-qwen3-8b-r0/workdir/.agenthep_guard.py", line 68, in _guarded_open
    return _real_open(file, mode, *a, **k)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
FileNotFoundError: [Errno 2] No such file or directory: 'figures/zfit.svg'

exit code: 1
files modified: result.json
#6 modeldebug_242821606 tok30.897st+139.361s
```python import numpy as np import pandas as pd import matplotlib.pyplot as plt from scipy.optimize import least_squares from scipy.stats import norm import json import os # Ensure the output directories exist os.makedirs('figures', exist_ok=True) os.makedirs('data', exist_ok=True) # Read the data data = pd.read_csv('data/cms_dimuon_2011.csv') # Step 1: Quality selection selected = data[ (data['type1'] == 'G') & (data['type2'] == 'G') & (np.abs(data['eta1']) < 2.4) & (np.abs(data['eta2']) < 2.4) & (data['pt1'] > 20) & (data['pt2'] > 20) & (data['Q1'] * data['Q2'] < 0) ] n_total = len(data) n_selected = len(selected) # Calculate efficiency efficiency = n_selected / n_total if n_total > 0 else 0.0 # Step 2: Histogram M M = selected['M'] hist, bin_edges = np.histogram(M, bins=40, range=(80, 100), density=False) bin_centers = (bin_edges[:-1] + bin_edges[1:]) / 2 n_in_range = sum(hist) # Step 3: Fit the histogram def fit_function(params, x, hist, bin_width): mu, sigma, n_sig, n_bkg, lam = params # Normalized Gaussian gauss = norm.pdf(x, loc=mu, scale=sigma) # Normalized Exponential exp_term = np.exp(-x / lam) exp_norm = (exp_term - np.exp(-80 / lam)) / (np.exp(-80 / lam) - np.exp(-100 / lam)) exp = exp_norm # Model model = n_sig * gauss + n_bkg * exp return model def objective(params, x, hist, bin_width): model = fit_function(params, x, hist, bin_width) return (model - hist) # Initial parameters initial_mu = 91 initial_sigma = 2 initial_n_sig = 0.9 * n_in_range initial_n_bkg = 0.1 * n_in_range initial_lam = 30 initial_params = [initial_mu, initial_sigma, initial_n_sig, initial_n_bkg, initial_lam] # Perform the fit result = least_squares(objective, initial_params, args=(bin_centers, hist, 0.5)) # Extract fitted parameters mu_fit = result.x[0] sigma_fit = result.x[1] n_sig_fit = result.x[2] n_bkg_fit = result.x[3] lam_fit = result.x[4] # Compute chi2 and ndf chi2 = np.sum((hist - fit_function(result.x, bin_centers, hist, 0.5)) ** 2 / hist) ndf = len(hist) - len(result.x) # Compute uncertainties from covariance matrix cov_matrix = result.jac.T @ result.jac std_devs = np.sqrt(np.diag(cov_matrix)) mu_err = std_devs[0] sigma_err = std_devs[1] n_sig_err = std_devs[2] n_bkg_err = std_devs[3] lam_err = std_devs[4] # Save results to JSON result_data = { "n_total": int(n_total), "n_selected": int(n_selected), "efficiency": float(efficiency), "n_in_range": int(n_in_range), "fit": { "mu": float(mu_fit), "mu_err": float(mu_err), "sigma": float(sigma_fit), "sigma_err": float(sigma_err), "n_sig": float(n_sig_fit), "n_sig_err": float(n_sig_err), "n_bkg": float(n_bkg_fit), "n_bkg_err": float(n_bkg_err), "lam": float(lam_fit), "lam_err": float(lam_err), "chi2": float(chi2), "ndf": int(ndf) } } with open('result.json', 'w') as f: json.dump(result_data, f) # Plot the data and fit plt.figure(figsize=(10, 6)) plt.errorbar(bin_centers, hist, yerr=np.sqrt(hist), fmt='o', label='Data', color='blue') x_fit = np.linspace(80, 100, 1000) y_fit = fit_function(result.x, x_fit, hist, 0.5) plt.plot(x_fit, y_fit, label='Fit', color='red') plt.xlabel('Invariant Mass (GeV)') plt.ylabel('Counts') plt.legend() plt.title('Z-peak Measurement') plt.savefig('figures/zfit.svg') # Generate REPORT.md report_content = """ ## Selection We applied the following quality cuts to select events: - Both muons are global (`type1 == "G"` and `type2 == "G"`) - |eta1| < 2.4 and |eta2| < 2.4 - pt1 > 20 GeV and pt2 > 20 GeV - Opposite charge (Q1*Q2 < 0) The total number of events is {n_total}, and after applying these cuts, we have {n_selected} selected events. The efficiency is {efficiency:.4f}. ## Fit We fit the invariant mass distribution in the range [80, 100] GeV using a combination of a Gaussian for signal and an exponential for background. The fit parameters are: - Mean (mu): {mu_fit:.2f} ± {mu_err:.2f} GeV - Sigma (sigma): {sigma_fit:.2f} ± {sigma_err:.2f} GeV - Signal yield (n_sig): {n_sig_fit:.2f} ± {n_sig_err:.2f} - Background yield (n_bkg): {n_bkg_fit:.2f} ± {n_bkg_err:.2f} - Background parameter (lam): {lam_fit:.2f} ± {lam_err:.2f} - Chi-squared (chi2): {chi2:.2f} with {ndf} degrees of freedom ## Assumptions - The signal is modeled as a Gaussian distribution. - The background is modeled as an exponential distribution. - The fit uses a least squares minimization with uncertainties calculated from the covariance matrix. - The initial parameters for the fit were chosen based on physical expectations. """.format( n_total=int(n_total), n_selected=int(n_selected), efficiency=float(efficiency), mu_fit=float(mu_fit), mu_err=float(mu_err), sigma_fit=float(sigma_fit), sigma_err=float(sigma_err), n_sig_fit=float(n_sig_fit), n_sig_err=float(n_sig_err), n_bkg_fit=float(n_bkg_fit), n_bkg_err=float(n_bkg_err), lam_fit=float(lam_fit), lam_err=float(lam_err), chi2=float(chi2), ndf=int(ndf) ) with open('REPORT.md', 'w') as f: f.write(report_content) print("Analysis completed. All deliverables have been generated.") ```
#7 toolwrite_fileok0.001screated: solution.pyt+139.362s
wrote 5217 chars to solution.py
#8 toolrun_pythonok2.011screated: REPORT.md, figures/zfit.svgt+141.373s
STDOUT:
Analysis completed. All deliverables have been generated.

exit code: 0
files created: REPORT.md, figures/zfit.svg
files modified: result.json

Final answer

```python import numpy as np import pandas as pd import matplotlib.pyplot as plt from scipy.optimize import least_squares from scipy.stats import norm import json import os # Ensure the output directories exist os.makedirs('figures', exist_ok=True) os.makedirs('data', exist_ok=True) # Read the data data = pd.read_csv('data/cms_dimuon_2011.csv') # Step 1: Quality selection selected = data[ (data['type1'] == 'G') & (data['type2'] == 'G') & (np.abs(data['eta1']) < 2.4) & (np.abs(data['eta2']) < 2.4) & (data['pt1'] > 20) & (data['pt2'] > 20) & (data['Q1'] * data['Q2'] < 0) ] n_total = len(data) n_selected = len(selected) # Calculate efficiency efficiency = n_selected / n_total if n_total > 0 else 0.0 # Step 2: Histogram M M = selected['M'] hist, bin_edges = np.histogram(M, bins=40, range=(80, 100), density=False) bin_centers = (bin_edges[:-1] + bin_edges[1:]) / 2 n_in_range = sum(hist) # Step 3: Fit the histogram def fit_function(params, x, hist, bin_width): mu, sigma, n_sig, n_bkg, lam = params # Normalized Gaussian gauss = norm.pdf(x, loc=mu, scale=sigma) # Normalized Exponential exp_term = np.exp(-x / lam) exp_norm = (exp_term - np.exp(-80 / lam)) / (np.exp(-80 / lam) - np.exp(-100 / lam)) exp = exp_norm # Model model = n_sig * gauss + n_bkg * exp return model def objective(params, x, hist, bin_width): model = fit_function(params, x, hist, bin_width) return (model - hist) # Initial parameters initial_mu = 91 initial_sigma = 2 initial_n_sig = 0.9 * n_in_range initial_n_bkg = 0.1 * n_in_range initial_lam = 30 initial_params = [initial_mu, initial_sigma, initial_n_sig, initial_n_bkg, initial_lam] # Perform the fit result = least_squares(objective, initial_params, args=(bin_centers, hist, 0.5)) # Extract fitted parameters mu_fit = result.x[0] sigma_fit = result.x[1] n_sig_fit = result.x[2] n_bkg_fit = result.x[3] lam_fit = result.x[4] # Compute chi2 and ndf chi2 = np.sum((hist - fit_
no assumptions stated
Numbers in the summary not found in any produced artifact: 100, -100

Grader verdict

16 / 20 checks passed
CheckResultCategoryWeightDetailObservedExpected
result_existscritical✓ passartifact1ok
figure_exists✓ passartifact1ok
report_exists✓ passartifact1ok
solution_exists✓ passartifact1ok
n_total✓ passnumeric1match100000100000
n_selectedcritical✓ passnumeric2match57525752
efficiency✓ passnumeric1match0.057520.05752
n_in_range✓ passnumeric1match46564656
mucritical✓ passnumeric3match90.7963290604780290.81742851182433
mu_err✗ failnumeric1observed 344.12147036281044 vs expected 0.04041956410068175 (atol=0.0, rtol=0.3)344.121470362810440.04041956410068175
sigma✓ passnumeric2match2.03148953533877652.0683943522914467
n_sigcritical✗ failnumeric2observed 1876.0141975531728 vs expected 3625.2626159476545 (atol=0.0, rtol=0.05)1876.01419755317283625.2626159476545
n_bkg✗ failnumeric1observed -31.175324893126287 vs expected 953.5651208923147 (atol=0.0, rtol=0.25)-31.175324893126287953.5651208923147
chi2✗ failnumeric1observed 350.74750467062717 vs expected 77.19180249502361 (atol=0.0, rtol=0.1)350.7475046706271777.19180249502361
ndf✓ passnumeric1match3535
report_sections✓ passcompliance2all present["## Selection","## Fit","## Assumptions"]
svg_legend✓ passplot1labels present["Matplotlib v3.9.2, https://matplotlib.org/","80.0","82.5","85.0","87.5","90.0"["data","fit","GeV"]
svg_drawn✓ passplot1drawn109">=10"
reruns✓ passreproducibility1reproduced exactly{"ok":true,"artifacts_reproduced":true,"output_matches":true,"exit_code":0}
not_hardcoded✓ passcompliance1no expected values hard-coded[]

Reproducibility rerun

script executes
✓ pass
artifacts reproduced
✓ pass
output matches submission
✓ exact
dependencies resolvable
✓ pass
seed controlled
no randomness used
detail
reproduced exactly

Artifacts

solution.py: write_file · result.json: run_python · REPORT.md: run_python · figures/zfit.svg: run_python
result.json
{"n_total": 100000, "n_selected": 5752, "efficiency": 0.05752, "n_in_range": 4656, "fit": {"mu": 90.79632906047802, "mu_err": 344.12147036281044, "sigma": 2.0314895353387765, "sigma_err": 421.46099473220096, "n_sig": 1876.0141975531728, "n_sig_err": 0.5269934736613361, "n_bkg": -31.175324893126287, "n_bkg_err": 3.651168789018113, "lam": -307769.4174918953, "lam_err": 7.289127555701092e-08, "chi2": 350.74750467062717, "ndf": 35}}
REPORT.md

## Selection
We applied the following quality cuts to select events:
- Both muons are global (`type1 == "G"` and `type2 == "G"`)
- |eta1| < 2.4 and |eta2| < 2.4
- pt1 > 20 GeV and pt2 > 20 GeV
- Opposite charge (Q1*Q2 < 0)

The total number of events is 100000, and after applying these cuts, we have 5752 selected events. The efficiency is 0.0575.

## Fit
We fit the invariant mass distribution in the range [80, 100] GeV using a combination of a Gaussian for signal and an exponential for background. The fit parameters are:
- Mean (mu): 90.80 ± 344.12 GeV
- Sigma (sigma): 2.03 ± 421.46 GeV
- Signal yield (n_sig): 1876.01 ± 0.53
- Background yield (n_bkg): -31.18 ± 3.65
- Background parameter (lam): -307769.42 ± 0.00
- Chi-squared (chi2): 350.75 with 35 degrees of freedom

## Assumptions
- The signal is modeled as a Gaussian distribution.
- The background is modeled as an exponential distribution.
- The fit uses a least squares minimization with uncertainties calculated from the covariance matrix.
- The initial parameters for the fit were chosen based on physical expectations.
solution.py
import numpy as np
import pandas as pd
import matplotlib.pyplot as plt
from scipy.optimize import least_squares
from scipy.stats import norm
import json
import os

# Ensure the output directories exist
os.makedirs('figures', exist_ok=True)
os.makedirs('data', exist_ok=True)

# Read the data
data = pd.read_csv('data/cms_dimuon_2011.csv')

# Step 1: Quality selection
selected = data[
    (data['type1'] == 'G') & 
    (data['type2'] == 'G') &
    (np.abs(data['eta1']) < 2.4) &
    (np.abs(data['eta2']) < 2.4) &
    (data['pt1'] > 20) &
    (data['pt2'] > 20) &
    (data['Q1'] * data['Q2'] < 0)
]

n_total = len(data)
n_selected = len(selected)

# Calculate efficiency
efficiency = n_selected / n_total if n_total > 0 else 0.0

# Step 2: Histogram M
M = selected['M']
hist, bin_edges = np.histogram(M, bins=40, range=(80, 100), density=False)
bin_centers = (bin_edges[:-1] + bin_edges[1:]) / 2
n_in_range = sum(hist)

# Step 3: Fit the histogram
def fit_function(params, x, hist, bin_width):
    mu, sigma, n_sig, n_bkg, lam = params
    # Normalized Gaussian
    gauss = norm.pdf(x, loc=mu, scale=sigma)
    # Normalized Exponential
    exp_term = np.exp(-x / lam)
    exp_norm = (exp_term - np.exp(-80 / lam)) / (np.exp(-80 / lam) - np.exp(-100 / lam))
    exp = exp_norm
    # Model
    model = n_sig * gauss + n_bkg * exp
    return model

def objective(params, x, hist, bin_width):
    model = fit_function(params, x, hist, bin_width)
    return (model - hist)

# Initial parameters
initial_mu = 91
initial_sigma = 2
initial_n_sig = 0.9 * n_in_range
initial_n_bkg = 0.1 * n_in_range
initial_lam = 30
initial_params = [initial_mu, initial_sigma, initial_n_sig, initial_n_bkg, initial_lam]

# Perform the fit
result = least_squares(objective, initial_params, args=(bin_centers, hist, 0.5))

# Extract fitted parameters
mu_fit = result.x[0]
sigma_fit = result.x[1]
n_sig_fit = result.x[2]
n_bkg_fit = result.x[3]
lam_fit = result.x[4]

# Compute chi2 and ndf
chi2 = np.sum((hist - fit_function(result.x, bin_centers, hist, 0.5)) ** 2 / hist)
ndf = len(hist) - len(result.x)

# Compute uncertainties from covariance matrix
cov_matrix = result.jac.T @ result.jac
std_devs = np.sqrt(np.diag(cov_matrix))
mu_err = std_devs[0]
sigma_err = std_devs[1]
n_sig_err = std_devs[2]
n_bkg_err = std_devs[3]
lam_err = std_devs[4]

# Save results to JSON
result_data = {
    "n_total": int(n_total),
    "n_selected": int(n_selected),
    "efficiency": float(efficiency),
    "n_in_range": int(n_in_range),
    "fit": {
        "mu": float(mu_fit),
        "mu_err": float(mu_err),
        "sigma": float(sigma_fit),
        "sigma_err": float(sigma_err),
        "n_sig": float(n_sig_fit),
        "n_sig_err": float(n_sig_err),
        "n_bkg": float(n_bkg_fit),
        "n_bkg_err": float(n_bkg_err),
        "lam": float(lam_fit),
        "lam_err": float(lam_err),
        "chi2": float(chi2),
        "ndf": int(ndf)
    }
}

with open('result.json', 'w') as f:
    json.dump(result_data, f)

# Plot the data and fit
plt.figure(figsize=(10, 6))
plt.errorbar(bin_centers, hist, yerr=np.sqrt(hist), fmt='o', label='Data', color='blue')
x_fit = np.linspace(80, 100, 1000)
y_fit = fit_function(result.x, x_fit, hist, 0.5)
plt.plot(x_fit, y_fit, label='Fit', color='red')
plt.xlabel('Invariant Mass (GeV)')
plt.ylabel('Counts')
plt.legend()
plt.title('Z-peak Measurement')
plt.savefig('figures/zfit.svg')

# Generate REPORT.md
report_content = """
## Selection
We applied the following quality cuts to select events:
- Both muons are global (`type1 == "G"` and `type2 == "G"`)
- |eta1| < 2.4 and |eta2| < 2.4
- pt1 > 20 GeV and pt2 > 20 GeV
- Opposite charge (Q1*Q2 < 0)

The total number of events is {n_total}, and after applying these cuts, we have {n_selected} selected events. The efficiency is {efficiency:.4f}.

## Fit
We fit the invariant mass distribution in the range [80, 100] GeV using a combination of a Gaussian for signal and an exponential for background. The fit parameters are:
- Mean (mu): {mu_fit:.2f} ± {mu_err:.2f} GeV
- Sigma (sigma): {sigma_fit:.2f} ± {sigma_err:.2f} GeV
- Signal yield (n_sig): {n_sig_fit:.2f} ± {n_sig_err:.2f}
- Background yield (n_bkg): {n_bkg_fit:.2f} ± {n_bkg_err:.2f}
- Background parameter (lam): {lam_fit:.2f} ± {lam_err:.2f}
- Chi-squared (chi2): {chi2:.2f} with {ndf} degrees of freedom

## Assumptions
- The signal is modeled as a Gaussian distribution.
- The background is modeled as an exponential distribution.
- The fit uses a least squares minimization with uncertainties calculated from the covariance matrix.
- The initial parameters for the fit were chosen based on physical expectations.
""".format(
    n_total=int(n_total),
    n_selected=int(n_selected),
    efficiency=float(efficiency),
    mu_fit=float(mu_fit),
    mu_err=float(mu_err),
    sigma_fit=float(sigma_fit),
    sigma_err=float(sigma_err),
    n_sig_fit=float(n_sig_fit),
    n_sig_err=float(n_sig_err),
    n_bkg_fit=float(n_bkg_fit),
    n_bkg_err=float(n_bkg_err),
    lam_fit=float(lam_fit),
    lam_err=float(lam_err),
    chi2=float(chi2),
    ndf=int(ndf)
)

with open('REPORT.md', 'w') as f:
    f.write(report_content)

print("Analysis completed. All deliverables have been generated.")
figures/zfit.svg
2026-09-06T10:56:38.972017 image/svg+xml Matplotlib v3.9.2, https://matplotlib.org/ 80.0 82.5 85.0 87.5 90.0 92.5 95.0 97.5 100.0 Invariant Mass (GeV) 0 100 200 300 400 Counts Z-peak Measurement Fit Data

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